Adjustable chain trees for proteins

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

A chain tree is a data structure for changing protein conformations. It enables very fast detection of clashes and free energy potential calculations. A modified version of chain trees that adjust themselves to the changing conformations of folding proteins is introduced. This results in much tighter bounding volume hierarchies and therefore fewer intersection checks. Computational results indicate that the efficiency of the adjustable chain trees is significantly improved compared to the traditional chain trees.

OriginalsprogEngelsk
TidsskriftJournal of Computational Biology
Vol/bind19
Udgave nummer1
Sider (fra-til)83-99
Antal sider17
ISSN1066-5277
DOI
StatusUdgivet - 2012

ID: 33926272